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SCHIST
Tutorials
API Reference
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Index
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A
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C
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D
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F
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G
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H
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I
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L
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M
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N
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P
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R
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S
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V
_
__author__ (in module schist)
__email__ (in module schist)
__version__ (in module schist)
_Layout (in module schist.tools._draw_graph)
_LAYOUTS (in module schist.tools._draw_graph)
A
alluvial() (in module schist.plotting)
(in module schist.plotting._alluvial)
C
calculate_affinity() (in module schist.tools)
(in module schist.tools._affinity_tools)
cell_similarity() (in module schist.tools)
(in module schist.tools._affinity_tools)
cell_stability() (in module schist.tools)
(in module schist.tools._affinity_tools)
check_gt_version() (in module schist._helpers)
(in module schist.tools._helpers)
cluster_consistency() (in module schist.tools)
(in module schist.tools._affinity_tools)
D
draw_graph() (in module schist.tools)
(in module schist.tools._draw_graph)
draw_tree() (in module schist.plotting)
(in module schist.plotting._draw_tree)
F
flat_model() (in module schist.inference)
(in module schist.inference._flat_model)
G
get_cell_back_p() (in module schist._utils)
(in module schist._utils._tl_utils)
(in module schist.tools)
get_cell_loglikelihood() (in module schist._utils)
(in module schist._utils._tl_utils)
(in module schist.tools)
get_config() (in module schist._version)
get_graph_tool_from_adata() (in module schist._utils)
(in module schist._utils._gt_utils)
get_graph_tool_from_adjacency() (in module schist._utils)
(in module schist._utils._gt_utils)
get_keywords() (in module schist._version)
get_multi_graph_from_adata() (in module schist._utils)
(in module schist._utils._gt_utils)
get_versions() (in module schist)
(in module schist._version)
git_get_keywords() (in module schist._version)
git_pieces_from_vcs() (in module schist._version)
git_versions_from_keywords() (in module schist._version)
H
HANDLERS (in module schist._version)
I
isnotebook() (in module schist.plotting._draw_tree)
L
label_transfer() (in module schist.tools)
(in module schist.tools._affinity_tools)
leiden() (in module schist.inference)
(in module schist.inference._pmleiden)
LONG_VERSION_PY (in module schist._version)
M
module
schist
schist._helpers
schist._utils
schist._utils._gt_utils
schist._utils._pl_utils
schist._utils._tl_utils
schist._version
schist.inference
,
[1]
schist.inference._flat_model
schist.inference._multi_nested
schist.inference._nested_model
schist.inference._planted_model
schist.inference._pmleiden
schist.plotting
,
[1]
schist.plotting._alluvial
schist.plotting._draw_tree
schist.tools
,
[1]
schist.tools._affinity_tools
schist.tools._draw_graph
schist.tools._helpers
schist.tools._select
MutableVertexPartition (class in schist.inference._pmleiden)
N
nested_model() (in module schist.inference)
(in module schist.inference._nested_model)
nested_model_multi() (in module schist.inference)
(in module schist.inference._multi_nested)
NotThisMethod
P
planted_model() (in module schist.inference)
(in module schist.inference._planted_model)
plug_state() (in module schist._utils)
(in module schist._utils._gt_utils)
plus_or_dot() (in module schist._version)
prune_groups() (in module schist._utils)
(in module schist._utils._gt_utils)
R
register_vcs_handler() (in module schist._version)
render() (in module schist._version)
render_git_describe() (in module schist._version)
render_git_describe_long() (in module schist._version)
render_pep440() (in module schist._version)
render_pep440_old() (in module schist._version)
render_pep440_post() (in module schist._version)
render_pep440_pre() (in module schist._version)
run_command() (in module schist._version)
S
schist
module
schist._helpers
module
schist._utils
module
schist._utils._gt_utils
module
schist._utils._pl_utils
module
schist._utils._tl_utils
module
schist._version
module
schist.inference
module
,
[1]
schist.inference._flat_model
module
schist.inference._multi_nested
module
schist.inference._nested_model
module
schist.inference._planted_model
module
schist.inference._pmleiden
module
schist.plotting
module
,
[1]
schist.plotting._alluvial
module
schist.plotting._draw_tree
module
schist.tools
module
,
[1]
schist.tools._affinity_tools
module
schist.tools._draw_graph
module
schist.tools._helpers
module
schist.tools._select
module
select_affinity() (in module schist.tools._select)
state_from_blocks() (in module schist._utils)
(in module schist._utils._gt_utils)
(in module schist.tools)
V
VersioneerConfig (class in schist._version)
versions_from_parentdir() (in module schist._version)
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