Tutorials

Typical Usage

In ored to perform cluster analysis on single cell data, count matrices must be previously prepared for the analysis. For a brief and effective example of single cell RNA sequencing (scRNA-seq) data processing, check the Scanpy tutorial of 3k PBMCs.

A list of currently available tutorials and examples covers

• Clustering of 3k PBMCs

• Label transfer

• Analysis of multimodal data

Advanced Usage

The following tutorials cover some experimental and/or advanced approaches, useful for specific problems

• Integration with cellrank

• Analysis of large datasets